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Bacteroides fragilis
Pleomorphic Gram-negative bacilli
Identification & Growth
Identification
- Strict anaerobe, grows in 20% bile, resistant to kanamycin, vancomycin and colistin
- Catalase-positive (uncommon among anaerobes)
Growth Conditions
- Bacteroides Bile Esculin (BBE) agar: dark colonies with a brown-black halo
- Anaerobic jar or chamber, 35 °C, 48–72 h
Clinical Significance
- Intra-abdominal abscess, peritonitis, polymicrobial soft-tissue infection
Intrinsic Resistance
- Aminoglycosides, aztreonam, older quinolones, colistin, vancomycin
Bench Alerts
- Produces beta-lactamase: penicillin and ampicillin alone will fail
- Metronidazole, piperacillin-tazobactam and carbapenems are the predictable options
- The specimen must be sent in anaerobic transport medium, without air exposure
Clinical Notes
Clinical presentations
- Is the most frequently isolated gram-negative anaerobe in intra-abdominal infections, including abscesses and postperforation peritonitis.
- Causes polymicrobial gynecologic infections, including tubo-ovarian abscess and postsurgical pelvic infection.
- Bacteremia due to B. fragilis is frequently associated with a primary intra-abdominal or pelvic source.
Specimens and collection
- Specimens should be collected by aspiration or biopsy into an anaerobic container, avoiding prolonged air exposure.
- Superficial swabs are inadequate for anaerobic culture due to risk of contamination by surface aerobic flora.
- Blood cultures in anaerobic bottles should be collected when bacteremia of intra-abdominal origin is suspected.
Epidemiology and at-risk populations
- Is part of the normal gastrointestinal microbiota, becoming pathogenic after disruption of the intestinal barrier.
- Patients undergoing abdominal surgery, penetrating trauma, or intestinal perforation have increased risk of invasive infection.
Resistance and therapeutic implications
- Is the anaerobic species with the highest rate of beta-lactam resistance among clinically relevant anaerobes, mainly mediated by beta-lactamase production.
- Metronidazole, carbapenems, and beta-lactam/beta-lactamase inhibitor combinations retain good activity against most isolates.
- Susceptibility testing is not performed routinely but is recommended in treatment failure or recurrent severe infections.
Bench and reporting notes
- Anaerobic culture requires an anaerobic chamber or jar and prolonged incubation, often 48-72 hours.
- Mass spectrometry (MALDI-TOF) identification significantly accelerates turnaround time compared to traditional biochemical methods.
- Polymicrobial cultures of intra-abdominal origin frequently include B. fragilis alongside Enterobacterales and enterococci.
Sources
- CLSI — Anaerobic bacteriology resources
- PubMed — Bacteroides fragilis clinical review
- EUCAST — Clinical breakpoints
Educational decision-support content. It does not replace laboratory validation, current guidelines or review by the responsible professional.
FAQ: Frequently Asked Questions
How to identify Bacteroides fragilis in the lab?
Bacteroides fragilis is identified through strict anaerobe, grows in 20% bile, resistant to kanamycin, vancomycin and colistin, catalase-positive (uncommon among anaerobes).
What are the intrinsic resistances of Bacteroides fragilis?
This organism is naturally resistant to aminoglycosides, aztreonam, older quinolones, colistin, vancomycin. These drugs should not be reported as susceptible.
Where is Bacteroides fragilis commonly found?
It is typically associated with intra-abdominal abscess, peritonitis, polymicrobial soft-tissue infection.
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